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NPIPA9 nuclear pore complex interacting protein family, member A9 [ Homo sapiens (human) ]

Gene ID: 105376752, updated on 28-Oct-2024

Summary

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Official Symbol
NPIPA9provided by HGNC
Official Full Name
nuclear pore complex interacting protein family, member A9provided by HGNC
Primary source
HGNC:HGNC:41984
See related
Ensembl:ENSG00000233024 AllianceGenome:HGNC:41984
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in skin (RPKM 65.4), ovary (RPKM 63.0) and 25 other tissues See more
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Genomic context

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See NPIPA9 in Genome Data Viewer
Location:
16p12.3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (18358090..18376839, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (18372372..18391116, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (18451947..18470696, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene PKD1P4-NPIPA8 readthrough Neighboring gene nuclear pore complex interacting protein family member A8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:18435865-18436656 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 4 Neighboring gene microRNA 6511a-4 Neighboring gene PKD1P5-LOC105376752 readthrough Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 5 Neighboring gene microRNA 6770-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:18488581-18489448 Neighboring gene uncharacterized LOC112268172 Neighboring gene microRNA 3180-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Readthrough PKD1P5-LOC105376752

Readthrough gene: PKD1P5-LOC105376752, Included gene: PKD1P5

Homology

General protein information

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Preferred Names
nuclear pore complex-interacting protein family member A9
Names
NPIP-like protein 1
nuclear pore complex interacting protein family member A5 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401710.1 → NP_001388639.1  nuclear pore complex-interacting protein family member A9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC126755
    Consensus CDS
    CCDS92118.1
    UniProtKB/Swiss-Prot
    A0A0B4J1W7, P0DXC3

  2. NM_001405004.1 → NP_001391933.1  nuclear pore complex-interacting protein family member A9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC126755
    UniProtKB/Swiss-Prot
    A0A0B4J1W7, P0DXC3
    Related
    ENSP00000389275.2, ENST00000427999.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    18358090..18376839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    717619..736347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    18372372..18391116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_053050.1: Suppressed sequence

    Description
    NG_053050.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4J1W7.1 GenPept UniProtKB/Swiss-Prot:A0A0B4J1W7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials