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LOC105376553 uncharacterized LOC105376553 [ Homo sapiens (human) ]

Gene ID: 105376553, updated on 17-Sep-2024

Summary

Gene symbol
LOC105376553
Gene description
uncharacterized LOC105376553
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC105376553 in Genome Data Viewer
Location:
11p15.4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (11635334..11645153, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (11724533..11734370, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene uncharacterized LOC107983976 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_18862 Neighboring gene NANOG hESC enhancer GRCh37_chr11:11530882-11531383 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:11559636-11560464 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_18916 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4454 Neighboring gene uncharacterized LOC124902632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11591851-11592350 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19011 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3157 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11641433-11642402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4457 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11643492-11643992 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19059 Neighboring gene microRNA 4299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:11712870-11713394 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:11713395-11713918 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:11738330-11739529 Neighboring gene microRNA 8070

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    11635334..11645153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_931034.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    11724533..11734370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082457.1 RNA Sequence