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LOC105376314 uncharacterized LOC105376314 [ Homo sapiens (human) ]

Gene ID: 105376314, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376314
Gene description
uncharacterized LOC105376314
See related
Ensembl:ENSG00000236403
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376314 in Genome Data Viewer
Location:
9q34.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (134936524..134943207)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (147158197..147164880)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (137828370..137835053)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101448202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137755823-137756551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137756552-137757279 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137764334-137764507 Neighboring gene MPRA-validated peak7344 silencer Neighboring gene ficolin 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137781651-137782151 Neighboring gene ficolin 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137820358-137821216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137821217-137822074 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29291 Neighboring gene uncharacterized LOC124902302 Neighboring gene uncharacterized LOC105376313 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137874334-137874924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137874925-137875513 Neighboring gene uncharacterized LOC124902303

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188683.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353611
    Related
    ENST00000664778.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    134936524..134943207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    147158197..147164880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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