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LOC105376291 uncharacterized LOC105376291 [ Homo sapiens (human) ]

Gene ID: 105376291, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376291
Gene description
uncharacterized LOC105376291
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376291 in Genome Data Viewer
Location:
9q34.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (129437146..129447551)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (141641700..141652102)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (132199425..132209830)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987038 Neighboring gene RNA, 7SL, cytoplasmic 159, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20373 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132161327-132162271 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132166696-132167301 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132167302-132167906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132168512-132169115 Neighboring gene Sharpr-MPRA regulatory region 9976 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20374 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20375 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20377 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132177164-132177983 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132178577-132179076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132184764-132185294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132198524-132199168 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132199169-132199813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29112 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132221391-132221912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132221913-132222433 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132222565-132223188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132231019-132231830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132231831-132232642 Neighboring gene uncharacterized LOC124902283 Neighboring gene Sharpr-MPRA regulatory region 12687 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132248797-132249456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132250117-132250776 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132252097-132252756 Neighboring gene extensin-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132252757-132253416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132253417-132254075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132256099-132256899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132256900-132257699 Neighboring gene long intergenic non-protein coding RNA 963 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132257700-132258500 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132258501-132259299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132259614-132260182 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132260183-132260750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188645.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353803

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    129437146..129447551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    141641700..141652102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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