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LOC105376208 uncharacterized LOC105376208 [ Homo sapiens (human) ]

Gene ID: 105376208, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376208
Gene description
uncharacterized LOC105376208
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376208 in Genome Data Viewer
Location:
9q31.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (107734799..107812955)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (119906337..119981446)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104366 Neighboring gene uncharacterized LOC105376207 Neighboring gene uncharacterized LOC124902242 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:110500475-110500976 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:110500977-110501476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:110501606-110502106 Neighboring gene NANOG hESC enhancer GRCh37_chr9:110513433-110514160 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28752 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:110517211-110518410 Neighboring gene uncharacterized LOC105376209 Neighboring gene GATA motif-containing MPRA enhancer 40 Neighboring gene RNA, U6 small nuclear 1064, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 659, pseudogene Neighboring gene ribosomal protein L36a pseudogene 6 Neighboring gene small EDRK-rich factor 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    107734799..107812955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930229.2 RNA Sequence

  2. XR_930228.2 RNA Sequence

  3. XR_007061720.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    119906337..119981446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079910.1 RNA Sequence

  2. XR_007079911.1 RNA Sequence

  3. XR_007079909.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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