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LOC105376142 uncharacterized LOC105376142 [ Homo sapiens (human) ]

Gene ID: 105376142, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376142
Gene description
uncharacterized LOC105376142
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376142 in Genome Data Viewer
Location:
9q22.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (90158810..90161228)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (102323916..102326334)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28567 Neighboring gene MIR4290 host gene Neighboring gene NANOG hESC enhancer GRCh37_chr9:92796466-92797003 Neighboring gene microRNA 4290 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92822514-92823713 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92824519-92825718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28568 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108944 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28569 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20019 Neighboring gene interleukin 6 receptor pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92912157-92912789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20020 Neighboring gene olfactory receptor family 7 subfamily E member 31 pseudogene Neighboring gene olfactory receptor family 7 subfamily E member 116 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    90158810..90161228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930109.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    102323916..102326334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079724.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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