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LOC105376126 uncharacterized LOC105376126 [ Homo sapiens (human) ]

Gene ID: 105376126, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376126
Gene description
uncharacterized LOC105376126
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376126 in Genome Data Viewer
Location:
9q21.33
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (87195950..87299009, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (99349379..99452404, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89763162-89763670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89763671-89764178 Neighboring gene long intergenic non-protein coding RNA 2872 Neighboring gene Sharpr-MPRA regulatory region 9207 Neighboring gene NANOG hESC enhancer GRCh37_chr9:89814775-89815276 Neighboring gene uncharacterized LOC124900285 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:89891312-89892511 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:89951383-89951552 Neighboring gene uncharacterized LOC105376127 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:90001899-90002782 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:90017019-90017636 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:90017637-90018252 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:90020422-90020972 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene hESC enhancers GRCh37_chr9:90024569-90025224 and GRCh37_chr9:90025225-90025878 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:90025879-90026532 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:90031115-90031768

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. Majewska M, et al. Int J Mol Sci, 2018 Jun 27. PMID 29954144, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    87195950..87299009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061642.1 RNA Sequence

  2. XR_001746813.2 RNA Sequence

  3. XR_001746814.2 RNA Sequence

  4. XR_001746811.2 RNA Sequence

  5. XR_007061641.1 RNA Sequence

  6. XR_001746816.2 RNA Sequence

  7. XR_007061640.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    99349379..99452404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079691.1 RNA Sequence

  2. XR_007079687.1 RNA Sequence

  3. XR_007079688.1 RNA Sequence

  4. XR_007079686.1 RNA Sequence

  5. XR_007079689.1 RNA Sequence

  6. XR_007079690.1 RNA Sequence

Nucleotide Protein
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