U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TMEM252-DT TMEM252 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105376072, updated on 25-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
TMEM252-DTprovided by HGNC
Official Full Name
TMEM252 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54377
See related
Ensembl:ENSG00000226337 AllianceGenome:HGNC:54377
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TMEM252-DT in Genome Data Viewer
Location:
9q21.11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (68541025..68644450)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (80714616..80817976)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 5 Neighboring gene uncharacterized LOC124902174 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:71177322-71177856 Neighboring gene long intergenic non-protein coding RNA 1506 Neighboring gene transmembrane protein 252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71210490-71210990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71210991-71211491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71231697-71232198 Neighboring gene uncharacterized LOC105376071 Neighboring gene dermatan sulfate epimerase pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19927 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28438 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19928 Neighboring gene NANOG hESC enhancer GRCh37_chr9:71283997-71284549 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:71319670-71320595 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28440 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:71358945-71359139 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 beta Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:71370585-71371135 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:71394470-71394884 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:71394889-71395717 Neighboring gene adaptor related protein complex 3 subunit mu 2 pseudogene Neighboring gene PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187592.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353616
    Related
    ENST00000413269.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    68541025..68644450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    80714616..80817976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases