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LOC105376002 uncharacterized LOC105376002 [ Homo sapiens (human) ]

Gene ID: 105376002, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376002
Gene description
uncharacterized LOC105376002
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376002 in Genome Data Viewer
Location:
9p21.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (27664367..27684209)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (27674977..27694814)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:27610369-27610870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:27610871-27611370 Neighboring gene uncharacterized LOC107987058 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:27679142-27679886 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:27683189-27684388 Neighboring gene CTAGE family member 12, pseudogene Neighboring gene uncharacterized LOC124902135 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107363 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:27771740-27772389 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:27788871-27789372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28255 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19823 Neighboring gene leucine rich repeat and Ig domain containing 2 Neighboring gene putative UPF0607 protein ENSP00000383783 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    27664367..27684209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061441.1 RNA Sequence

  2. XR_001746640.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    27674977..27694814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080247.1 RNA Sequence

  2. XR_007080246.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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