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LOC105375959 uncharacterized LOC105375959 [ Homo sapiens (human) ]

Gene ID: 105375959, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375959
Gene description
uncharacterized LOC105375959
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375959 in Genome Data Viewer
Location:
9p24.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (3194427..3195799, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (3198250..3199623, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr9:2904131-2904714 Neighboring gene ATP synthase peripheral stalk subunit d pseudogene 2 Neighboring gene coactivator associated arginine methyltransferase 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:3181301-3181935 Neighboring gene long intergenic non-protein coding RNA 1231 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:3290904-3291705 Neighboring gene regulatory factor X3 Neighboring gene VISTA enhancer hs1350 Neighboring gene Sharpr-MPRA regulatory region 5337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28139 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:3478271-3479470 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:3525142-3525758 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28141 Neighboring gene uncharacterized LOC124902110 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28142 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:3577789-3577989

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    3194427..3195799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_929439.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    3198250..3199623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079885.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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