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LINC02847 long intergenic non-protein coding RNA 2847 [ Homo sapiens (human) ]

Gene ID: 105375823, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02847provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2847provided by HGNC
Primary source
HGNC:HGNC:54383
See related
AllianceGenome:HGNC:54383
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (48597086..48620971, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (48974928..48998813, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268027 Neighboring gene uncharacterized LOC101929268 Neighboring gene VISTA enhancer hs1431 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:49502230-49503429 Neighboring gene uncharacterized LOC124901943 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49536704-49537208 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:49539781-49540980 Neighboring gene long intergenic non-protein coding RNA 3054 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:49549377-49550576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49558419-49558919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49608983-49609482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49647232-49647906 Neighboring gene calaxin Neighboring gene uncharacterized LOC105375825 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:49700925-49702124 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:49711615-49712177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49731577-49732548

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187517.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022915, AC026904

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    48597086..48620971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    48974928..48998813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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