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LINC02947 long intergenic non-protein coding RNA 2947 [ Homo sapiens (human) ]

Gene ID: 105375822, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02947provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2947provided by HGNC
Primary source
HGNC:HGNC:55962
See related
Ensembl:ENSG00000253140
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (48515852..48518082, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (48893692..48895922, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49231254-49231772 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:49236051-49236559 Neighboring gene RNA, 5S ribosomal pseudogene 531 Neighboring gene uncharacterized LOC105375821 Neighboring gene ribosomal protein L29 pseudogene 19 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49341750-49342261 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49342262-49342774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49342775-49343285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49347319-49347818 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19182 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19183 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27332 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:49442616-49443179 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:49454562-49455175 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:49455176-49455788 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:49457717-49458282 Neighboring gene uncharacterized LOC112268027 Neighboring gene uncharacterized LOC101929268 Neighboring gene VISTA enhancer hs1431 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:49502230-49503429 Neighboring gene uncharacterized LOC124901943

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183462.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026904
    Related
    ENST00000521359.2

  2. NR_183463.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026904
    Related
    ENST00000665034.1

  3. NR_183464.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026904

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    48515852..48518082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    48893692..48895922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases