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LINC02964 long intergenic non-protein coding RNA 2964 [ Homo sapiens (human) ]

Gene ID: 105375746, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02964provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2964provided by HGNC
Primary source
HGNC:HGNC:53487
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q24.13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (125519907..125680134)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (126653430..126807671)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase Neighboring gene Sharpr-MPRA regulatory region 6874 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:126312861-126313361 Neighboring gene RNA, 7SL, cytoplasmic 329, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27910 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:126346157-126346974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:126389339-126389905 Neighboring gene Sharpr-MPRA regulatory region 8491 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:126398994-126399684 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:126400790-126401290 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:126401291-126401791 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:126416953-126417640 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:126417641-126418327 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:126427297-126428194 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:126428195-126429092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27913 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:126433597-126434098 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:126434099-126434598 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19518 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27914 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19519 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27915 Neighboring gene Sharpr-MPRA regulatory region 8664 Neighboring gene MPRA-validated peak7163 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:126513538-126514038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27916 Neighboring gene tribbles pseudokinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27917 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:126525111-126526310 Neighboring gene TRIB1 associated lncRNA Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:126533553-126534054 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:126544853-126545039 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:126558198-126558636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:126569037-126569774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27924 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27927 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:126667345-126668544 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:126691873-126693072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27928 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:126745383-126745936 Neighboring gene uncharacterized LOC105375747 Neighboring gene MPRA-validated peak7166 silencer Neighboring gene uncharacterized LOC124902017

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    125519907..125680134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746072.2 RNA Sequence

  2. XR_007061095.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    126653430..126807671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079421.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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