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LINC02855 long intergenic non-protein coding RNA 2855 [ Homo sapiens (human) ]

Gene ID: 105375732, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02855provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2855provided by HGNC
Primary source
HGNC:HGNC:54392
See related
Ensembl:ENSG00000254209 AllianceGenome:HGNC:54392
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8q24.13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (121668948..121697557, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (122799414..122828021, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L35a pseudogene 19 Neighboring gene Sharpr-MPRA regulatory region 7296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:122651136-122651636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:122651637-122652137 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:122654339-122654962 Neighboring gene HAS2 antisense RNA 1 Neighboring gene hyaluronan synthase 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:122835396-122836122 Neighboring gene NANOG hESC enhancer GRCh37_chr8:122856182-122856696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:122938752-122939252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:122939253-122939753 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:123118688-123119188 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:123139098-123139752 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 3 Neighboring gene uncharacterized LOC105375733 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:123391043-123391713

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183453.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104233

  2. NR_183454.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104233

  3. NR_183455.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104233
    Related
    ENST00000663221.1

  4. NR_183456.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104233

  5. NR_183457.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104233
    Related
    ENST00000666599.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    121668948..121697557 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    122799414..122828021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases