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LOC105375556 uncharacterized LOC105375556 [ Homo sapiens (human) ]

Gene ID: 105375556, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105375556
Gene description
uncharacterized LOC105375556
See related
Ensembl:ENSG00000230190
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7q35
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (147671679..147673144)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (148851841..148853306)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (147368771..147370236)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene contactin associated protein 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:147120875-147121406 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:147133565-147134311 Neighboring gene microRNA 548f-4 Neighboring gene uncharacterized LOC107986721 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:147304031-147304584 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:147304585-147305137 Neighboring gene NANOG hESC enhancer GRCh37_chr7:147500602-147501173 Neighboring gene RNA, U6 small nuclear 1184, pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 249

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The human contactin-associated protein-like 2 gene (CNTNAP2) spans over 2 Mb of DNA at chromosome 7q35. Nakabayashi K, et al. Genomics, 2001 Apr 1. PMID 11352571

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC005518.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133929.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BF188822, BF188823, BX385984
    Related
    ENST00000448131.1

  2. NR_133930.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BF188823, BX385985

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    147671679..147673144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    148851841..148853306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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