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H2AZ2-DT H2AZ2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105375261, updated on 10-Oct-2023

Summary

Official Symbol
H2AZ2-DTprovided by HGNC
Official Full Name
H2AZ2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:52775
See related
AllianceGenome:HGNC:52775
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01952
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
7p13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (44848471..44849565)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (45008957..45010051)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18154 Neighboring gene peptidylprolyl isomerase A Neighboring gene H2A.Z variant histone 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:44887269-44887826 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:44887827-44888385 Neighboring gene Sharpr-MPRA regulatory region 12861 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:44924201-44925160 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25957 Neighboring gene purine rich element binding protein B Neighboring gene microRNA 4657 Neighboring gene uncharacterized LOC105375262

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • long intergenic non-protein coding RNA 1952

Clone Names

  • AC004854.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187580.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004854
  2. NR_187581.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004854

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    44848471..44849565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    45008957..45010051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)