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LOC105374976 uncharacterized LOC105374976 [ Homo sapiens (human) ]

Gene ID: 105374976, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374976
Gene description
uncharacterized LOC105374976
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374976 in Genome Data Viewer
Location:
6p22.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (23336746..23626334, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (23209618..23500121, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374974 Neighboring gene RNA, U6 small nuclear 1060, pseudogene Neighboring gene ribosomal protein L6 pseudogene 18 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:23175123-23176322 Neighboring gene VISTA enhancer hs1352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:23218776-23219447 Neighboring gene uncharacterized LOC102724749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24149 Neighboring gene uncharacterized LOC105374975 Neighboring gene uncharacterized LOC124901276 Neighboring gene Sharpr-MPRA regulatory region 10928 Neighboring gene NANOG hESC enhancer GRCh37_chr6:23716734-23717235 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:23804320-23804820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:23804821-23805321 Neighboring gene putative UPF0607 protein ENSP00000332738-like Neighboring gene serine palmitoyltransferase long chain base subunit 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    23336746..23626334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744046.2 RNA Sequence

  2. XR_007059501.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    23209618..23500121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076624.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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