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MIR548A1HG MIR548A1 host gene [ Homo sapiens (human) ]

Gene ID: 105374956, updated on 10-Oct-2023

Summary

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Official Symbol
MIR548A1HGprovided by HGNC
Official Full Name
MIR548A1 host geneprovided by HGNC
Primary source
HGNC:HGNC:53539
See related
AllianceGenome:HGNC:53539
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See MIR548A1HG in Genome Data Viewer
Location:
6p22.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (18522747..18722898)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (18394447..18594705)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (18522978..18723129)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ring finger protein 144B Neighboring gene uncharacterized LOC124901271 Neighboring gene uncharacterized LOC105374955 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:18527823-18528458 Neighboring gene VISTA enhancer hs1052 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:18584790-18585989 Neighboring gene microRNA 548a-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:18656829-18657328 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:18693220-18694419 Neighboring gene uncharacterized LOC105374957 Neighboring gene Sharpr-MPRA regulatory region 7591 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:18759725-18760225 Neighboring gene tRNA-Gln (anticodon CTG) 1-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK098665, AL136230

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    18522747..18722898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    18394447..18594705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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