U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NUP153-AS1 NUP153 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105374952, updated on 26-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
NUP153-AS1provided by HGNC
Official Full Name
NUP153 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55217
See related
AllianceGenome:HGNC:55217
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 5.6) and lymph node (RPKM 0.4) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NUP153-AS1 in Genome Data Viewer
Location:
6p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (17706130..17711027)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (17578381..17583278)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (17706361..17711258)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:17601938-17602438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:17602439-17602939 Neighboring gene MPRA-validated peak5701 silencer Neighboring gene family with sequence similarity 8 member A1 Neighboring gene MPRA-validated peak5703 silencer Neighboring gene RNA, U6 small nuclear 190, pseudogene Neighboring gene nucleoporin 153 Neighboring gene MPRA-validated peak5705 silencer Neighboring gene MPRA-validated peak5706 silencer Neighboring gene Sharpr-MPRA regulatory region 5716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:17685707-17686206 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24114 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:17704301-17704470 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16965 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:17706574-17707268 Neighboring gene Sharpr-MPRA regulatory region 4388 Neighboring gene RNA, 5S ribosomal pseudogene 204 Neighboring gene uncharacterized LOC124901554

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134616.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AW978570, BC035502, BC046172

  2. NR_134618.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' exon structure, contains additional 3' exons, and is shorter than variant 1.
    Source sequence(s)
    DB024632

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    17706130..17711027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    17578381..17583278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials