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LOC105374919 uncharacterized LOC105374919 [ Homo sapiens (human) ]

Gene ID: 105374919, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105374919
Gene description
uncharacterized LOC105374919
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374919 in Genome Data Viewer
Location:
6p24.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (10041199..10062357)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (9909883..9931015)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901255 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:9405051-9406250 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:9456335-9456986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23963 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23964 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:9614589-9615788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23965 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:9648237-9649436 Neighboring gene uncharacterized LOC124901484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16898 Neighboring gene orofacial cleft 1 candidate 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:9810687-9811203 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:9811204-9811719 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:9971388-9971998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:9971999-9972609 Neighboring gene MPRA-validated peak5651 silencer Neighboring gene uncharacterized LOC124900218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:10134047-10134548 Neighboring gene uncharacterized LOC105374918 Neighboring gene ribosomal protein L7a pseudogene 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    10041199..10062357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_926457.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    9909883..9931015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076517.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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