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LINC01795 long intergenic non-protein coding RNA 1795 [ Homo sapiens (human) ]

Gene ID: 105374744, updated on 10-Oct-2023

Summary

Official Symbol
LINC01795provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1795provided by HGNC
Primary source
HGNC:HGNC:52585
See related
AllianceGenome:HGNC:52585
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
2p16.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (58275877..58296548)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (58280706..58301375)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (58503012..58523683)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene VRK serine/threonine kinase 2 Neighboring gene MPRA-validated peak3710 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58434313-58435228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11507 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:58478751-58479291 Neighboring gene FA complementation group L Neighboring gene eukaryotic translation initiation factor 3 subunit F pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58724227-58724831 Neighboring gene IK cytokine, down-regulator of HLA II pseudogene Neighboring gene VISTA enhancer hs1174 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:58762333-58763089 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:58766943-58767526 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:58767527-58768108 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:58781578-58782078 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:58782079-58782579 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58785797-58786470 Neighboring gene long intergenic non-protein coding RNA 1122 Neighboring gene VISTA enhancer hs1071 Neighboring gene VISTA enhancer hs1152 Neighboring gene VISTA enhancer hs1067 Neighboring gene VISTA enhancer hs1199 Neighboring gene uncharacterized LOC124907771

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147010.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007250, BI825310

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    58275877..58296548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    58280706..58301375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)