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RAI14-DT RAI14 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105374723, updated on 10-Oct-2023

Summary

Official Symbol
RAI14-DTprovided by HGNC
Official Full Name
RAI14 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55983
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
5p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (34649109..34656173, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (34896205..34903269, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900958 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34526666-34527166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34527167-34527667 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:34564051-34565021 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:34565004-34565218 Neighboring gene uncharacterized LOC105374721 Neighboring gene Sharpr-MPRA regulatory region 6534 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:34621050-34621410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15966 Neighboring gene retinoic acid induced 14 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34700297-34700798 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34700799-34701298 Neighboring gene uncharacterized LOC124900960 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34721500-34722000 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:34722001-34722501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:34735806-34736306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:34736307-34736807 Neighboring gene NANOG hESC enhancer GRCh37_chr5:34736814-34737353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22465 Neighboring gene MPRA-validated peak5222 silencer Neighboring gene TTC23L antisense RNA 1 Neighboring gene tetratricopeptide repeat domain 23 like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183264.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025754

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    34649109..34656173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    34896205..34903269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)