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LOC105374647 uncharacterized LOC105374647 [ Homo sapiens (human) ]

Gene ID: 105374647, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105374647
Gene description
uncharacterized LOC105374647
See related
Ensembl:ENSG00000249782
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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See LOC105374647 in Genome Data Viewer
Location:
5p15.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (8525195..8561682)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (8465050..8501566)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (8525307..8561794)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2226 Neighboring gene FAST kinase domains 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22347 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15908 Neighboring gene MIR4458 host gene Neighboring gene NANOG hESC enhancer GRCh37_chr5:8473920-8474541 Neighboring gene microRNA 4458 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:8549695-8550894 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:8606154-8606898 Neighboring gene MT-CYB pseudogene 37 Neighboring gene MT-ND6 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027328, AC091953
    Related
    ENST00000659580.1

  2. NR_188264.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027328, AC091953
    Related
    ENST00000657075.1

  3. NR_188265.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC027328, AC091953
    Related
    ENST00000654467.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    8525195..8561682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    8465050..8501566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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