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LOC105374643 uncharacterized LOC105374643 [ Homo sapiens (human) ]

Gene ID: 105374643, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374643
Gene description
uncharacterized LOC105374643
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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See LOC105374643 in Genome Data Viewer
Location:
5p15.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (7272795..7277743)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (7210705..7215652)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2196 Neighboring gene RNA, 5S ribosomal pseudogene 176 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:7066450-7067649 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:7162929-7163428 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:7193603-7194166 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:7194167-7194728 Neighboring gene uncharacterized LOC124900935 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:7262186-7262734 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:7262735-7263283 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:7263457-7264224 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:7267572-7268422 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:7268423-7269274 Neighboring gene C-X9-C motif containing 2 pseudogene Neighboring gene golgin A6 family-like 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    7272795..7277743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_925749.3 RNA Sequence

  2. XR_925750.3 RNA Sequence

  3. XR_925751.3 RNA Sequence

  4. XR_925752.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    7210705..7215652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075447.1 RNA Sequence

  2. XR_007075448.1 RNA Sequence

  3. XR_007075449.1 RNA Sequence

  4. XR_007075450.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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