U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPTBN1-AS1 SPTBN1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105374640, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
SPTBN1-AS1provided by HGNC
Official Full Name
SPTBN1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40562
See related
AllianceGenome:HGNC:40562
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPTBN1-AS2
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
2p16.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (54519317..54558705, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (54513323..54552711, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene chromosome 2 open reading frame 73 Neighboring gene uncharacterized LOC102724072 Neighboring gene NANOG hESC enhancer GRCh37_chr2:54711535-54712045 Neighboring gene spectrin beta, non-erythrocytic 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:54724305-54724844 Neighboring gene C9orf85 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:54725305-54725489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15759 Neighboring gene ribosomal protein L23a pseudogene 32 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11487 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11488 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15761 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15762 Neighboring gene uncharacterized LOC124906008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:54856263-54856861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15766 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15768 Neighboring gene Sharpr-MPRA regulatory region 11587 Neighboring gene SPTBN1 antisense RNA 2 Neighboring gene uncharacterized LOC105374653

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • SPTBN1 antisense RNA 2

Clone Names

  • AC092839.3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185881.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092839

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    54519317..54558705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    54513323..54552711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases