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LOC105374621 uncharacterized LOC105374621 [ Homo sapiens (human) ]

Gene ID: 105374621, updated on 27-Aug-2024

Summary

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Gene symbol
LOC105374621
Gene description
uncharacterized LOC105374621
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5p15.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (3036667..3042023)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (2951545..2957781)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107983966 Neighboring gene uncharacterized LOC107984098 Neighboring gene Sharpr-MPRA regulatory region 1936 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3029100-3029600 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3079616-3080276 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3099596-3100470 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3100471-3101344 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3101345-3102218 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:3103093-3103967 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3127153-3127350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3133320-3133820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3133821-3134321 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:3176917-3178116 Neighboring gene VISTA enhancer hs603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3185307-3185822 Neighboring gene VISTA enhancer hs533 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3191198-3191363 Neighboring gene VISTA enhancer hs754 Neighboring gene long intergenic non-protein coding RNA 1377 Neighboring gene NANOG hESC enhancer GRCh37_chr5:3251839-3252659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3266942-3267940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3301153-3301654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3301655-3302154 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:3310881-3312080 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:3325507-3325688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3346175-3346676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:3346677-3347176 Neighboring gene long intergenic non-protein coding RNA 1019 Neighboring gene long intergenic non-protein coding RNA 2162

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    3036667..3042023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059095.1 RNA Sequence

  2. XR_925702.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    2951545..2957781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076224.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials