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PRKCE-AS1 PRKCE antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105374580, updated on 10-Oct-2023

Summary

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Official Symbol
PRKCE-AS1provided by HGNC
Official Full Name
PRKCE antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40474
See related
AllianceGenome:HGNC:40474
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2p21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (45673340..45675520, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (45679752..45680571, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene S1 RNA binding domain 1 Neighboring gene RNA, 7SL, cytoplasmic 414, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15687 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:45867535-45867711 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11438 Neighboring gene uncharacterized LOC102724965 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11439 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11440 Neighboring gene Sharpr-MPRA regulatory region 4153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45878872-45879492 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:45899906-45900117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15688 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15689 Neighboring gene protein kinase C epsilon Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15691 Neighboring gene tRNA-Gln (anticodon TTG) 5-1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:45959936-45960443 Neighboring gene Sharpr-MPRA regulatory region 1594 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:46013490-46014689 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15692 Neighboring gene Sharpr-MPRA regulatory region 10855 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:46050503-46051025 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:46051026-46051547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15693 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15694 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:46063209-46063734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15695 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15696 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:46121150-46121322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15698 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:46185885-46186435 Neighboring gene uncharacterized LOC124907761 Neighboring gene Sharpr-MPRA regulatory region 2946 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:46190573-46191772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    45673340..45675520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940049.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    45679752..45680571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072029.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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