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LOC105374459 uncharacterized LOC105374459 [ Homo sapiens (human) ]

Gene ID: 105374459, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374459
Gene description
uncharacterized LOC105374459
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374459 in Genome Data Viewer
Location:
2p22.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (34598070..34616581, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (34605210..34623464, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1317 Neighboring gene long intergenic non-protein coding RNA 1318 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:34347101-34348300 Neighboring gene NANOG hESC enhancer GRCh37_chr2:34357521-34358022 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:34386814-34388013 Neighboring gene uncharacterized LOC105374457 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:34590940-34591515 Neighboring gene NANOG hESC enhancer GRCh37_chr2:34633108-34633610 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:34770234-34770811 Neighboring gene MPRA-validated peak3654 silencer Neighboring gene uncharacterized LOC107985865 Neighboring gene uncharacterized LOC105374458 Neighboring gene uncharacterized LOC124907752 Neighboring gene long intergenic non-protein coding RNA 1320

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    34598070..34616581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739398.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    34605210..34623464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071946.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials