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SMIM14-DT SMIM14 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105374419, updated on 10-Oct-2023

Summary

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Official Symbol
SMIM14-DTprovided by HGNC
Official Full Name
SMIM14 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53455
See related
Ensembl:ENSG00000255458 AllianceGenome:HGNC:53455
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.0), brain (RPKM 0.2) and 3 other tissues See more
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Genomic context

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See SMIM14-DT in Genome Data Viewer
Location:
4p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (39639140..39666664)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (39608818..39636335)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21460 Neighboring gene UGDH antisense RNA 1 Neighboring gene small integral membrane protein 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21463 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21464 Neighboring gene RNA, U7 small nuclear 11 pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:39640427-39641144 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:39642916-39643511 Neighboring gene MPRA-validated peak5027 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21465 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21466 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21467 Neighboring gene ubiquitin conjugating enzyme E2 K Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15372 Neighboring gene RNA, 7SL, cytoplasmic 558, pseudogene Neighboring gene zinc finger and BTB domain containing 12B, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183842.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000526807.2

  2. NR_183843.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000657228.1

  3. NR_183844.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000529314.2

  4. NR_183845.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471

  5. NR_183846.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000667934.1

  6. NR_183847.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000666863.1

  7. NR_183848.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471

  8. NR_183849.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000659162.1

  9. NR_183850.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471

  10. NR_183851.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471

  11. NR_183852.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108471
    Related
    ENST00000693190.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    39639140..39666664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    39608818..39636335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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