U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02513 long intergenic non-protein coding RNA 2513 [ Homo sapiens (human) ]

Gene ID: 105374410, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02513provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2513provided by HGNC
Primary source
HGNC:HGNC:53502
See related
Ensembl:ENSG00000248227 AllianceGenome:HGNC:53502
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
4p14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (38366914..38385759)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (38335975..38354830)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (38368535..38387380)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900694 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79608 Neighboring gene uncharacterized LOC105374409 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:38282548-38282707 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21431 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:38319550-38320050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:38320051-38320551 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:38359157-38359381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21433 Neighboring gene Sharpr-MPRA regulatory region 4229 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:38426307-38426839 Neighboring gene long intergenic non-protein coding RNA 1258 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21434 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21435 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:38478457-38478956 Neighboring gene long intergenic non-protein coding RNA 1259 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21437 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21438 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21439 Neighboring gene long intergenic non-protein coding RNA 2278

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149123.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024023
    Related
    ENST00000503465.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    38366914..38385759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    38335975..38354830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases