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GTF3C2-AS2 GTF3C2 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 105374363, updated on 10-Oct-2023

Summary

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Official Symbol
GTF3C2-AS2provided by HGNC
Official Full Name
GTF3C2 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:55699
See related
AllianceGenome:HGNC:55699
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in duodenum (RPKM 2.1), thyroid (RPKM 2.0) and 25 other tissues See more
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Genomic context

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Location:
2p23.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (27356765..27367880)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (27399148..27410277)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitochondrial inner membrane protein MPV17 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27543343-27543946 Neighboring gene Sharpr-MPRA regulatory regions 9483 and 12628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15498 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27545801-27546773 Neighboring gene general transcription factor IIIC subunit 2 Neighboring gene GTF3C2 antisense RNA 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr2:27579025-27579638 and GRCh37_chr2:27579639-27580252 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27582391-27583132 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27592451-27593412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27593413-27594374 Neighboring gene eukaryotic translation initiation factor 2B subunit delta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27601343-27602213 Neighboring gene sorting nexin 17 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11297 Neighboring gene zinc finger protein 513 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1G Neighboring gene ferritin heavy chain 1 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC074117.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183824.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  2. NR_183825.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  3. NR_183826.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  4. NR_183827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  5. NR_183828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  6. NR_183829.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  7. NR_183830.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  8. NR_183831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  9. NR_183832.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  10. NR_183833.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  11. NR_183834.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  12. NR_183835.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  13. NR_183836.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  14. NR_183837.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  15. NR_183838.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

  16. NR_183839.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074117

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    27356765..27367880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    27399148..27410277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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