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LOC105374283 uncharacterized LOC105374283 [ Homo sapiens (human) ]

Gene ID: 105374283, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374283
Gene description
uncharacterized LOC105374283
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374283 in Genome Data Viewer
Location:
3q29
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (193787252..193792084)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196483884..196488717)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21007 Neighboring gene RNA, 7SL, cytoplasmic 447, pseudogene Neighboring gene uncharacterized LOC105374282 Neighboring gene VISTA enhancer hs1563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15010 Neighboring gene Sharpr-MPRA regulatory region 5455 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:193509438-193510095 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193513397-193513898 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193530149-193531058 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193532881-193533792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193536592-193537220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193537221-193537848 Neighboring gene uncharacterized LOC105374284 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21010 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:193560309-193560492 Neighboring gene long intergenic non-protein coding RNA 2038

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    193787252..193792084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924839.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    196483884..196488717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074085.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials