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LINC01995 long intergenic non-protein coding RNA 1995 [ Homo sapiens (human) ]

Gene ID: 105374244, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01995provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1995provided by HGNC
Primary source
HGNC:HGNC:52828
See related
Ensembl:ENSG00000244247 AllianceGenome:HGNC:52828
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01995 in Genome Data Viewer
Location:
3q26.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (182498290..182507124, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (185303003..185311837, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (182216078..182224912, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374243 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:181930066-181931265 Neighboring gene VISTA enhancer hs1332 Neighboring gene Sharpr-MPRA regulatory region 2239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:182033397-182033897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182044533-182045074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182045075-182045615 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182144163-182144749 Neighboring gene MPRA-validated peak4954 silencer Neighboring gene long intergenic non-protein coding RNA 1994 Neighboring gene Sharpr-MPRA regulatory region 13029 Neighboring gene eukaryotic translation initiation factor 4E pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:182217852-182218669 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:182240944-182242143 Neighboring gene RPL7L1 pseudogene 8 Neighboring gene long intergenic non-protein coding RNA 2031

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134941.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021055, BX103371
    Related
    ENST00000489016.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    182498290..182507124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    185303003..185311837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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