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LOC105374242 uncharacterized LOC105374242 [ Homo sapiens (human) ]

Gene ID: 105374242, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374242
Gene description
uncharacterized LOC105374242
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374242 in Genome Data Viewer
Location:
3q26.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (182025730..182027708, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (184830186..184832240, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:181566286-181566907 Neighboring gene Sharpr-MPRA regulatory region 859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:181584513-181585012 Neighboring gene PSMG3 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:181643649-181644242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:181644243-181644834 Neighboring gene long intergenic non-protein coding RNA 1206 Neighboring gene RN7SK pseudogene 265 Neighboring gene NANOG hESC enhancer GRCh37_chr3:181839149-181839650 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:181857572-181858371 Neighboring gene uncharacterized LOC105374243 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:181930066-181931265 Neighboring gene VISTA enhancer hs1332 Neighboring gene Sharpr-MPRA regulatory region 2239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:182033397-182033897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182044533-182045074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182045075-182045615 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:182144163-182144749 Neighboring gene MPRA-validated peak4954 silencer Neighboring gene long intergenic non-protein coding RNA 1994 Neighboring gene eukaryotic translation initiation factor 4E pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    182025730..182027708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924755.2 RNA Sequence

  2. XR_924754.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    184830186..184832240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074013.1 RNA Sequence

  2. XR_007074012.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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