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LINC02006 long intergenic non-protein coding RNA 2006 [ Homo sapiens (human) ]

Gene ID: 105374165, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02006provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2006provided by HGNC
Primary source
HGNC:HGNC:52842
See related
AllianceGenome:HGNC:52842
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3q25.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (153383550..153762526, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (156154118..156533504, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (153101339..153480315, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14831 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14830 Neighboring gene uncharacterized LOC105374164 Neighboring gene NANOG hESC enhancer GRCh37_chr3:152943874-152944499 Neighboring gene MPRA-validated peak4867 silencer Neighboring gene RNA, 7SL, cytoplasmic 300, pseudogene Neighboring gene RAP2B, member of RAS oncogene family Neighboring gene Sharpr-MPRA regulatory region 1900 Neighboring gene Sharpr-MPRA regulatory region 4515 Neighboring gene long intergenic non-protein coding RNA 3109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20717 Neighboring gene long intergenic non-protein coding RNA 2083 Neighboring gene RNA, U6 small nuclear 901, pseudogene Neighboring gene long intergenic non-protein coding RNA 2877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:153514677-153515178 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:153598703-153599902 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20719 Neighboring gene U8 small nucleolar RNA Neighboring gene ribosomal protein L21 pseudogene 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146713.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078788, BM909339, KF457698

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    153383550..153762526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    156154118..156533504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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