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LOC105374163 uncharacterized LOC105374163 [ Homo sapiens (human) ]

Gene ID: 105374163, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105374163
Gene description
uncharacterized LOC105374163
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374163 in Genome Data Viewer
Location:
3q25.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (152495381..152500040, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (155263311..155267970, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:151985921-151986763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:151986764-151987605 Neighboring gene MBNL1 antisense RNA 1 Neighboring gene muscleblind like splicing regulator 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20707 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20708 Neighboring gene transmembrane protein 14E, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr3:152202190-152202395 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14826 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20709 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:152314625-152315295 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:152320355-152321049 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:152321050-152321743 Neighboring gene uncharacterized LOC102724289 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:152406405-152406933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20710 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20711 Neighboring gene uncharacterized LOC124909449

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    152495381..152500040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924589.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    155263311..155267970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073927.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials