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LOC105374107 uncharacterized LOC105374107 [ Homo sapiens (human) ]

Gene ID: 105374107, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374107
Gene description
uncharacterized LOC105374107
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374107 in Genome Data Viewer
Location:
3q22.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (130813723..130836572)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (133557556..133580385)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14734 Neighboring gene uncharacterized LOC107986023 Neighboring gene RN7SK pseudogene 212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:130557669-130558434 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:130558435-130559198 Neighboring gene uncharacterized LOC105374108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20524 Neighboring gene glutathione S-transferase omega 3, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:130587640-130588528 Neighboring gene ATPase secretory pathway Ca2+ transporting 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20525 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14735 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20526 Neighboring gene CSRP2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    130813723..130836572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001740494.2 RNA Sequence

  2. XR_924480.3 RNA Sequence

  3. XR_924482.3 RNA Sequence

  4. XR_924481.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    133557556..133580385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073830.1 RNA Sequence

  2. XR_007073829.1 RNA Sequence

  3. XR_007073832.1 RNA Sequence

  4. XR_007073831.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials