U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02021 long intergenic non-protein coding RNA 2021 [ Homo sapiens (human) ]

Gene ID: 105374104, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02021provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2021provided by HGNC
Primary source
HGNC:HGNC:52856
See related
Ensembl:ENSG00000249846 AllianceGenome:HGNC:52856
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02021 in Genome Data Viewer
Location:
3q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (130111707..130120569)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (132855549..132864410)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (129830550..129839412)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2 Neighboring gene long intergenic non-protein coding RNA 2014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:129815614-129816445 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:129818109-129818938 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14731 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14732 Neighboring gene uncharacterized LOC124909432 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:129857063-129857830 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:129871903-129872656 Neighboring gene uncharacterized LOC107986131 Neighboring gene uncharacterized LOC107986133 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146653.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC130888, BM972421, HY061037

  2. NR_146654.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC130888, BM972421, DA891486
    Related
    ENST00000504808.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    130111707..130120569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    132855549..132864410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.