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LOC105374041 uncharacterized LOC105374041 [ Homo sapiens (human) ]

Gene ID: 105374041, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105374041
Gene description
uncharacterized LOC105374041
See related
Ensembl:ENSG00000243081
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374041 in Genome Data Viewer
Location:
3q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (112375841..112404415, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (115094355..115125443, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member C1 Neighboring gene ubiquitination factor E4A (UFD2 homolog, yeast) pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14603 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:112020972-112021844 Neighboring gene uncharacterized LOC105374042 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112051670-112052627 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112052628-112053584 Neighboring gene NANOG hESC enhancer GRCh37_chr3:112054081-112054840 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:112073606-112074235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20238 Neighboring gene CD200 molecule Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112109833-112110448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20239 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:112118629-112119141 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:112119142-112119653 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112119654-112120166 Neighboring gene uncharacterized LOC124909408 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:112125128-112125650 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:112132473-112132973 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:112135621-112136474 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112136475-112137328 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112137329-112138182 Neighboring gene 3q13.2-q13.31 proximal HERV-H recombination region Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:112141599-112142451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20240 Neighboring gene NANOG hESC enhancer GRCh37_chr3:112184939-112185454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:112192511-112193011 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20243 Neighboring gene B and T lymphocyte associated Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:112240775-112241275 Neighboring gene olfactory receptor family 7 subfamily E member 100 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    112375841..112404415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924334.3 RNA Sequence

    Related
    ENST00000793792.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    115094355..115125443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073724.1 RNA Sequence

  2. XR_007073725.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials