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LOC105374023 uncharacterized LOC105374023 [ Homo sapiens (human) ]

Gene ID: 105374023, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374023
Gene description
uncharacterized LOC105374023
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374023 in Genome Data Viewer
Location:
3q13.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (104995641..105017995)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (107713390..107735745)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374021 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20191 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:104241405-104242604 Neighboring gene uncharacterized LOC107986108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:104415525-104416025 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:104623147-104623701 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_64126 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:104875813-104876646 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:105015351-105015980 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20192 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:105072122-105072940 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14581 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:105088275-105088775 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:105087774-105088274 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20195 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14580 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:105120863-105122062 Neighboring gene uncharacterized LOC124906263 Neighboring gene activated leukocyte cell adhesion molecule Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:105222974-105223504 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:105223505-105224035 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:105438452-105439651 Neighboring gene Cbl proto-oncogene B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14582 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20198 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14583

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    104995641..105017995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924305.2 RNA Sequence

  2. XR_924306.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    107713390..107735745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074147.1 RNA Sequence

  2. XR_007074148.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials