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LOC105374016 uncharacterized LOC105374016 [ Homo sapiens (human) ]

Gene ID: 105374016, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374016
Gene description
uncharacterized LOC105374016
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374016 in Genome Data Viewer
Location:
3q12.3
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (102568033..102705585, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (105283325..105420833, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:102017651-102018850 Neighboring gene uncharacterized LOC107986105 Neighboring gene NANOG hESC enhancer GRCh37_chr3:102058061-102058569 Neighboring gene zona pellucida like domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 11515 Neighboring gene uncharacterized LOC107986106 Neighboring gene VISTA enhancer hs1469 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:102406508-102407028 Neighboring gene uncharacterized LOC105374017 Neighboring gene RNA, U6 small nuclear 461, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    102568033..102705585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001740824.2 RNA Sequence

  2. XR_924286.4 RNA Sequence

  3. XR_001740822.2 RNA Sequence

  4. XR_001740818.2 RNA Sequence

  5. XR_001740823.2 RNA Sequence

  6. XR_007095988.1 RNA Sequence

  7. XR_001740825.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    105283325..105420833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073695.1 RNA Sequence

  2. XR_007073692.1 RNA Sequence

  3. XR_007073694.1 RNA Sequence

  4. XR_007073693.1 RNA Sequence

  5. XR_007073690.1 RNA Sequence

  6. XR_007073691.1 RNA Sequence

  7. XR_007073696.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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