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LOC105374000 uncharacterized LOC105374000 [ Homo sapiens (human) ]

Gene ID: 105374000, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374000
Gene description
uncharacterized LOC105374000
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374000 in Genome Data Viewer
Location:
3q11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (98367878..98368608, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (101071573..101072303, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373999 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:98043469-98044668 Neighboring gene NANOG hESC enhancer GRCh37_chr3:98045278-98045876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14554 Neighboring gene olfactory receptor family 5 subfamily H member 8 (gene/pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:98047305-98048042 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:98048043-98048779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20135 Neighboring gene olfactory receptor family 5 subfamily K member 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:98115366-98115968 Neighboring gene olfactory receptor family 5 subfamily K member 3 Neighboring gene ubiquitin family domain containing 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    98367878..98368608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924261.2 RNA Sequence

  2. XR_924262.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    101071573..101072303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073664.1 RNA Sequence

  2. XR_007073663.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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