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LOC105373933 uncharacterized LOC105373933 [ Homo sapiens (human) ]

Gene ID: 105373933, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373933
Gene description
uncharacterized LOC105373933
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373933 in Genome Data Viewer
Location:
2q37.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (234285352..234301874, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (234774357..234790895, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene secreted phosphoprotein 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:235066116-235066288 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:235072133-235073332 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:235077257-235077756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235079950-235080452 Neighboring gene uncharacterized LOC105373932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235121411-235121911 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17353 Neighboring gene ribosomal protein S20 pseudogene 12 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235271392-235272591 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235276379-235276880 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235276881-235277380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235311534-235312034 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:235336101-235337300 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:235339493-235340044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17354 Neighboring gene long intergenic non-protein coding RNA 1891

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    234285352..234301874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088124.1 RNA Sequence

  2. XR_923992.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    234774357..234790895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072934.1 RNA Sequence

  2. XR_007072933.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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