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ACSL3-AS1 ACSL3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105373904, updated on 10-Oct-2023

Summary

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Official Symbol
ACSL3-AS1provided by HGNC
Official Full Name
ACSL3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40227
See related
AllianceGenome:HGNC:40227
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2q36.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (222916654..222919601, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (223399733..223402681, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373903 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:223659282-223660204 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:223660205-223661127 Neighboring gene Sharpr-MPRA regulatory region 2575 Neighboring gene Sharpr-MPRA regulatory region 9896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12374 Neighboring gene NANOG hESC enhancer GRCh37_chr2:223730990-223731491 Neighboring gene acyl-CoA synthetase long chain family member 3 Neighboring gene MPRA-validated peak4046 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:223770847-223771419 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:223771420-223771991 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:223772163-223772785 Neighboring gene autophagy related 12 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12375 Neighboring gene zinc finger protein 79 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17170 Neighboring gene Sharpr-MPRA regulatory region 15139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17171 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:223917216-223917763 Neighboring gene potassium voltage-gated channel subfamily E regulatory subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC097461.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    222916654..222919601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923949.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    223399733..223402681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072885.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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