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DIRC3-AS1 DIRC3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105373877, updated on 10-Oct-2023

Summary

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Official Symbol
DIRC3-AS1provided by HGNC
Official Full Name
DIRC3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50636
See related
AllianceGenome:HGNC:50636
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See DIRC3-AS1 in Genome Data Viewer
Location:
2q35
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (217282733..217344204)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (217765202..217826726)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (218147456..218208927)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373872 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:218073575-218074414 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:218082948-218083116 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17104 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:218088086-218089285 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:218125637-218126836 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:218134772-218135400 Neighboring gene RN7SK pseudogene 43 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:218156138-218156638 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:218156639-218157139 Neighboring gene Sharpr-MPRA regulatory region 8768 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:218199087-218199799 Neighboring gene disrupted in renal carcinoma 3 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:218234719-218235918 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_56988 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_56989 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_56990 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_56991 Neighboring gene uncharacterized LOC124907981 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_56992 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:218291011-218292210 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:218365243-218365794 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12307 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:218416177-218416745 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:218419796-218420396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:218474359-218475066 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17105 Neighboring gene ATPase H+/K+ transporting non-gastric alpha2 subunit pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC009492.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133642.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009492

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    217282733..217344204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    217765202..217826726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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