U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CALCRL-AS1 CALCRL and TFPI antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105373786, updated on 10-Oct-2023

Summary

Official Symbol
CALCRL-AS1provided by HGNC
Official Full Name
CALCRL and TFPI antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55863
See related
AllianceGenome:HGNC:55863
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CALCRL-AS1 in Genome Data Viewer
Location:
2q32.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (187003273..187547525)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (187492517..188036454)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12169 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:187599004-187599760 Neighboring gene family with sequence similarity 171 member B Neighboring gene MPRA-validated peak3974 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:187744049-187744226 Neighboring gene MPRA-validated peak3975 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:187775904-187776404 Neighboring gene zinc finger SWIM-type containing 2 Neighboring gene Sharpr-MPRA regulatory region 13129 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 7 Neighboring gene uncharacterized LOC124906106 Neighboring gene Sharpr-MPRA regulatory region 15485 Neighboring gene RN7SK pseudogene 42 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:188089626-188090332 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:188128426-188129109 Neighboring gene RNA, U6 small nuclear 989, pseudogene Neighboring gene Sharpr-MPRA regulatory region 15572 Neighboring gene MPRA-validated peak3978 silencer Neighboring gene MPRA-validated peak3980 silencer Neighboring gene MPRA-validated peak3982 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:188273472-188274250 Neighboring gene Sharpr-MPRA regulatory region 13492 Neighboring gene calcitonin receptor like receptor Neighboring gene MPRA-validated peak3983 silencer Neighboring gene MPRA-validated peak3984 silencer Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 59 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:188384681-188385366 Neighboring gene Sharpr-MPRA regulatory region 10664 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:188411556-188412755 Neighboring gene NANOG hESC enhancer GRCh37_chr2:188422789-188423371 Neighboring gene NANOG hESC enhancer GRCh37_chr2:188422204-188422788 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:188430328-188430906 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:188430907-188431484 Neighboring gene tissue factor pathway inhibitor Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:188480540-188481090 Neighboring gene NANOG hESC enhancer GRCh37_chr2:188483510-188484011 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:188535284-188535785 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:188540495-188541307 Neighboring gene MPRA-validated peak3986 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:188565262-188565763 Neighboring gene uncharacterized LOC105373788 Neighboring gene ST13, Hsp70 interacting protein pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187178.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007319, AC018735, AC112699
  2. NR_187179.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007319, AC018735, AC098485, AC112699
  3. NR_187180.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007319, AC018735, AC112699

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    187003273..187547525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    187492517..188036454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)