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LOC105373780 proline-rich protein 18-like [ Homo sapiens (human) ]

Gene ID: 105373780, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105373780
Gene description
proline-rich protein 18-like
See related
Ensembl:ENSG00000283839
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 1.7), appendix (RPKM 0.7) and 7 other tissues See more
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Genomic context

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See LOC105373780 in Genome Data Viewer
Location:
2q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (184593627..184598998, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (185082316..185087687, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (185458354..185463725, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724340 Neighboring gene uncharacterized LOC105373776 Neighboring gene uncharacterized LOC107985968 Neighboring gene uncharacterized LOC105373779 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:185389775-185390378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:185395422-185395922 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12164 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12165 Neighboring gene zinc finger protein 804A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:185550273-185550778 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:185550779-185551282 Neighboring gene ribosomal protein L23a pseudogene 33 Neighboring gene uncharacterized LOC105373782 Neighboring gene uncharacterized LOC105373781

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171621.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096667
    Related
    ENST00000640078.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    184593627..184598998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    185082316..185087687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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