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LINC01911 long intergenic non-protein coding RNA 1911 [ Homo sapiens (human) ]

Gene ID: 105373669, updated on 26-Oct-2023

Summary

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Official Symbol
LINC01911provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1911provided by HGNC
Primary source
HGNC:HGNC:52730
See related
Ensembl:ENSG00000231040 AllianceGenome:HGNC:52730
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01911 in Genome Data Viewer
Location:
2q22.3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (146837691..146878220)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (147287895..147328406)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907895 Neighboring gene poly(A) binding protein cytoplasmic 1 pseudogene 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:147391420-147392619 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:147578911-147579522 Neighboring gene nipsnap homolog 2 pseudogene Neighboring gene uncharacterized LOC107985824 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_53189 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:147705990-147706226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16609 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16610 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16612 Neighboring gene NANOG hESC enhancer GRCh37_chr2:148070432-148070964 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC103881.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187164.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC062032, AC103881
    Related
    ENST00000450667.2

  2. NR_187165.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC062032, AC103881

  3. NR_187166.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC062032, AC103881

  4. NR_187167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC062032, AC103881
    Related
    ENST00000669097.1

  5. NR_187168.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC103881

  6. NR_187169.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC103881
    Related
    ENST00000656564.1

  7. NR_187170.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC062032, AC103881
    Related
    ENST00000654856.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    146837691..146878220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    147287895..147328406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases