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SPOPL-DT SPOPL divergent transcript [ Homo sapiens (human) ]

Gene ID: 105373637, updated on 10-Oct-2023

Summary

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Official Symbol
SPOPL-DTprovided by HGNC
Official Full Name
SPOPL divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55802
See related
AllianceGenome:HGNC:55802
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2q22.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (138491063..138501695, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (138936755..138947387, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene IDI1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16593 Neighboring gene Sharpr-MPRA regulatory region 15192 Neighboring gene RNF14 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11986 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11987 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16595 Neighboring gene speckle type BTB/POZ protein like Neighboring gene uncharacterized LOC124905958

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC097721.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187149.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114763

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    138491063..138501695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    138936755..138947387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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