U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02572 long intergenic non-protein coding RNA 2572 [ Homo sapiens (human) ]

Gene ID: 105373615, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02572provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2572provided by HGNC
Primary source
HGNC:HGNC:53634
See related
Ensembl:ENSG00000229536 AllianceGenome:HGNC:53634
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02572 in Genome Data Viewer
Location:
2q21.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (129860213..129877491, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (130289840..130307118, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (130617786..130635064, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907889 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130501931-130502432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130502433-130502932 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:130505293-130505905 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:130515244-130515865 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:130515866-130516488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130539341-130540152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130540153-130540964 Neighboring gene uncharacterized LOC107985945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130616037-130616537 Neighboring gene Sharpr-MPRA regulatory region 12033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130635324-130635880 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130635881-130636436 Neighboring gene uncharacterized LOC105373616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130638314-130638814 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:130645385-130645622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130666529-130667049 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130671974-130672474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130672475-130672975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130680057-130680872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130680873-130681686 Neighboring gene long intergenic non-protein coding RNA 1856 Neighboring gene placenta associated 9 pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Microarray expression profiling of long non-coding RNAs in epithelial ovarian cancer. Ding Y, et al. Oncol Lett, 2017 Aug. PMID 28781691, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

Go to the top of the page Help

Clone Names

  • AC079776.1, AC079776.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149127.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079776
    Related
    ENST00000666679.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    129860213..129877491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791762.1 Reference GRCh38.p14 PATCHES

    Range
    32455..49733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    130289840..130307118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases